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Methane Center Publications

orange bullet Hazen, T. C. Accepted. Cometabolic Bioremediation. Handbook of Hydrocarbon and Lipid Microbiology Series. Consequences of Microbial Interaction with Hydrocarbons, Oils and Lipids: Biodegradation and Bioremediation. Revision submitted 01/14/2018.

orange bullet Hazen, T. C. Accepted. In Situ Groundwater Bioremediation. Handbook of Hydrocarbon and Lipid Microbiology Series. Consequences of Microbial Interaction with Hydrocarbons, Oils and Lipids: Biodegradation and Bioremediation. Revision submitted 01/15/2018

orange bullet Woo, H. L. and T. C. Hazen. Accepted. Enrichment of bacteria from Eastern Mediterranean Sea involved in lignin degradation via the phenylacetyl-CoA pathway. Frontiers in Aquatic Microbiology Accepted with revision 02/05/18

orange bullet Hazen, T. C. Accepted. Deep Basin Oil Biodegradation. Handbook of Hydrocarbon and Lipid Microbiology Series. Consequences of Microbial Interaction with Hydrocarbons, Oils and Lipids: Biodegradation and Bioremediation. Submitted 02/06/2018.

orange bullet Angeliki, M., C. Roger, T. C. Hazen, and D. H. Bartlett. Accepted. The effect of hydrostatic pressure on enrichments of hydrocarbon degrading microbes from the Gulf of Mexico following the Deepwater Horizon oil spill. Frontiers in Microbiology Accepted 02/11/18. (4.076, 0).

orange bullet Hazen, T. C. Accepted. Lessons from the 2010 Deepwater Horizon Accident in the Gulf of Mexico. Handbook of Hydrocarbon and Lipid Microbiology Series. Consequences of Microbial Interaction with Hydrocarbons, Oils and Lipids: Biodegradation and Bioremediation. submitted 02/11/2018.

orange bullet Hazen, T. C. Accepted. Environmental Systems Biology Approach to Bioremediation. Advances in Environmental Microbiology. Ed. C. Hurst. Springer. Submitted 02/23/2018.

orange bullet Campa, M. F., S. M. Techtmann, C. Gibson, X. Zhu, Megan Patterson, A. Garcia de Matos Amaral, N. Ulrich, S. R. Campagna, C. J. Grant, R. Lamendella, and T. C. Hazen. Accepted. Impacts of Glutaraldehyde on Microbial Community Structure and Degradation Potential in Streams Impacted by Hydraulic Fracturing.  EST 9/12/17, rejected 10/16/17 resubmitted 01/16/18, accepted with revision 3/7/18.

orange bullet Ulrich, N., V. Kirchner, R. Drucker, J. Wright, C. McLimans, T. C. Hazen, M. F. Campa, C. Grant, and G. Lamandella. Accepted. Response of Aquatic Bacterial Communities to Hydraulic Fracturing in Northwestern Pennsylvania: A Five-Year Study. Sci. Reports 8/22/17, Accepted 3/8/18.

orange bullet Ribicic, D., R. Netzer, T. C. Hazen, S. M. Techtmann, F. Drabløs, and O. Brakstad. 2018. Microbial community and metagenome dynamics during biodegradation of dispersed oil in cold seawater reveals potential key-players. Marine Pollution Bulletin 129:370-378. (3.146, 0).*

orange bullet Lewis, A. J., M. F. Campa, T. C. Hazen, and A. P. Borole. 2018. Unraveling Biocomplexity of Electroactive Biofilms for Producing Hydrogen from Biomass. Microbial BiotechnologyDOI: 10.1111/1751-7915.12756. (3.513, 2).

orange bullet Paradis, C. J., L. D. McKay, E. Perfect, J. D. Istok, and T. C. Hazen. 2018. In situ characterization of hydraulic conductivity and effective porosity utilizing single-well testing methods. Hydrogeology Journal 26:381–393. DOI 10.1007/s10040-017-1672-3. (2.109, 0)

orange bullet Wright, J. R., V. Kirchner, W. Bernard, N. Ulrich, C. McLimans, M. F. Campa, T. C. Hazen, T. Macbeth, D. Marabello, J. McDermott, R. Mackelprang, K. Roth, and R. Lamendella. 2017. Bacterial Community Dynamics in Dichloromethane-contaminated Groundwater Undergoing Natural Attenuation. Frontiers in Microbiology 8:15 DOI: 10.3389/fmicb.2017.02300. (4.076, 0).

orange bullet Liu, J., S. M. Techtmann, H. L. Woo, D. Ning, J. L. Fortney, and T. C. Hazen. 2017. Rapid Response of Eastern Mediterranean Deep Sea Microbial Communities to Oil. Nature Scientific Reports 7: 5762 | DOI:10.1038/s41598-017-05958-x (5.228, 0).

orange bullet Techtmann, S. M., M. Zhuang, P. Campo-Moreno, E. Holder, M. Elk, T. C. Hazen, R. Conmy, and J. W. Santo Domingo. 2017. COREXIT 9500 enhances oil biodegradation and changes microbial community structure of oil-enriched microcosms. Appl. Environ. Microbiol. doi:10.1128/AEM.03462-16. (3.807, 2)*

orange bullet Woo, H. L., K. B. O'Dell, S. Utturkar, K. R. McBride, M. Huntemann, A. Clum, M. Pillay, K. Palaniappan, N. Varghese, N. Mikhailova, D. Stamatis, T.B.K. Reddy, C. Ngan, C. Daum, N. Shapiro, V. Markowitz, N. Ivanova, N. Kyrpides, T. Woyke, S. D. Brown, and T. C. Hazen. 2016. Near-complete genome sequence of Thalassospira sp. strain KO164 isolated from a lignin-enriched marine sediment microcosm. Genome Announcements 3:4: e01297-16. doi: 10.1128/genomeA.01297-16. (NA, 0).*

orange bullet Techtmann, S. M., and T. C. Hazen. 2016. Metagenomic Applications in Environmental Monitoring and Bioremediation. J Ind. Microbiol. Biotechnol. 43: 1345. doi:10.1007/s10295-016-1809-8. (2.810, 5).

orange bullet Rocha, AM, Q. Yuan, D. Close, K. B. O’Dell, J. Fortney, J. Wu, and T. C. Hazen. 2016. Rapid Detection of Microbial Cell Abundance in Aquatic Systems. Biosensors & Bioelectronics 85:915-923 http://dx.doi.org/10.1016/j.bios.2016.05.098. (7.780, 8).

orange bullet Techtmann, S. M., K. S. Fitzgerald, S. C. Stelling, D. C. Joyner, S. M. Uttukar, A. P. Harris, N. K. Alshibli, S. D. Brown, and T. C. Hazen. 2016. Colwellia psychrerythraea strains from distant deep sea basins show adaptation to local conditions. Front. Environ. Sci.4:33. doi: 10.3389/fenvs.2016.00033 (NA, 4).*

orange bullet Hazen, T. C. and G. S. Sayler. 2016. Environmental Systems Microbiology of Contaminated Environments, p 5.1.6-1-5.1.6-10. In Yates M, Nakatsu C, Miller R, Pillai S (ed), Manual of Environmental Microbiology, 4th Edition. ASM Press, Washington, DC. doi: 10.1128/9781555818821.ch5.1.6. (NA, 1)

orange bullet Hazen, T. C., R. C. Prince, and N. Mahmoudi. 2016. Marine Oil Biodegradation. Feature Article. Environ. Sci. Technol. 50:2121-2129. DOI: 10.1021/acs.est.5b03333. (6.198, 26).

orange bullet Smith, M. B., Rocha, A. M., Smillie, C. S., Olesen, S. W., Paradis, C., Wu, L., Campbell, J. H., Fortney, J. L., Mehlhorn, T. L., Lowe, K. A., Earles, J. E., Phillips, J., Techtmann, S. M., Joyner, D. C., Elias, D. A., Bailey, K. L., Hurt, R. A., Preheim, S. P., Sanders, M. C., Yang, J., Mueller, M. A., Brooks, S., Watson, D. B., Zhang, P., He, Z., Dubinsky, E. A., Adams, P. D., Arkin, A. P., Fields, M. W., Zhou, J., Alm, E. J., and T. C. Hazen. 2015. Natural bacterial communities as quantitative biosensors. mBio 6 (DOI: 10.1128/mBio.00326-15). (6.786, 22)

orange bullet O'Dell, K. B., H. L. Woo, S. Utturkar, D. Klingeman, S. D. Brown, and T. C. Hazen. 2015. Genome sequence of Halomonas sp. strain KO116, an ionic liquid tolerant marine bacterium isolated from a lignin-enriched seawater microcosm. Genome Announcement 3:3. 10.1128/genomeA.00402-15. (xx, 5).

orange bullet Techtmann, S. M., J. L. Fortney, K. Ayers, D. C. Joyner, T. Linley, S. M. Pfiffner, and T. C. Hazen. 2015. The Unique Chemistry of Eastern Mediterranean Water Masses Selects for Distinct Microbial Communities by Depth.  Plos One 10: e0120605 DOI: 10.1371/journal.pone.0120605 (3.254, 17).

orange bullet Mahmoudi, N., M. S. Robeson II, H. F. Castro Gonzalez, J. L. Fortney, S. M. Techtmann, D. C. Joyner, C. J. Paradis, S. M. Pfiffner, and T. C. Hazen. 2015. Microbial community composition and diversity in Caspian Sea sediments. FEMS Microbiology Ecology 91:1-11, doi: 10.1093/femsec/fiu013. (3.720, 21).

orange bullet King, G. L., J. E. Kostka, T. C. Hazen, and P. A. Sobecky. 2015. Microbial Responses to the Deepwater Horizon Oil Spill in the Northern Gulf of Mexico: From Coastal Wetlands to the Deep Sea. Annual Review of Marine Science 7:377-401. doi:10.1146/annurev-marine-010814-015543. (12.333, 67). Note: Highly cited top 1% according to Essential Science Indicators January/February 2017.

orange bullet Harris, A. P., S. M. Techtmann, S. C. Stelling, S. M. Utturkar, N. K. Alshibli, S. D. Brown, and T. C. Hazen. 2014. Draft Genome Sequence of Pseudoalteromonas sp. strain ND6B, an oil degrading isolate from Eastern Mediterranean Sea water collected at a depth of 1210 m. Genome Announcement 2(6):e01212-14. doi:10.1128/genomeA.01212-14. (NA, 3).

orange bullet Stelling, S. C., S. M. Techtmann, S. M. Utturkar, N. K. Alshibli, S. D. Brown, and T. C. Hazen. 2014. Draft Genome Sequence of Thalassotalea sp. strain ND16A Isolated from Eastern Mediterranean Sea water collected from a depth of 1055 m. Genome Announcement 2(6):e01231-14. doi:10.1128/genomeA.01231-14. (NA, 4).

orange bullet Trexler. R., C. Solomon, E. McClure, C. Brislawn, A. Grube; M. Peterson, M. Keddache, O. U. Mason, T. C. Hazen, C. Grant, R. Lamendella. 2014. Assessing Impacts of Marcellus Shale Activity on Aquatic Microbial Communities in Headwater Stream Ecosystems in Western Pennsylvania. Front. Microbiol. 5:10.3389/fmicb.2014.00522 (4.076, 12)

orange bullet Piceno, Y., E. Dubinsky, F. Reid, L. Tom, P. Hu, M. Conrad, M. Bill, C. Hubbard, B. Fouke, C. Graff, J. Han, W. Stringfellow, J. Hanlon, T. C. Hazen, and G. Andersen. 2014. Temperature and sulfate availability structure microbial communities in four Alaskan North Slope hydrocarbon reservoirs. Front. Microbiol. 5:409. doi:10.3389/fmicb.2014.00409. (4.076, 9)

orange bullet Lamendella, R., S. Strutt, S. E. Borglin, R. Chakraborty, N. Tass, O. U. Mason, J. Hultman, E. Prestat, T. C. Hazen, and J. K. Jansson. 2014. Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities. Frontiers in Microbiology 5:1-13. doi: 10.3389/fmicb.2014.00130  (4.076, 71)

orange bullet Mason, O. U., N. M. Scott, A. Gonzalez, A. Robbins-Pianka, J. Bælum, J. Kimbrel, N. J. Bouskill, E. Prestat, S. Borglin, D. C. Joyner, J. L. Fortney, D. Jurelevicius, W. T. Stringfellow, L. Alvarez-Cohen, T. C. Hazen, R. Knight, J. A. Gilbert, and J. K. Jansson. 2014. Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill. ISME J 8:1464-1475. doi:10.1038/ismej.2013.254 (9.664, 125). Note: Highly cited top 1% according to Essential Science Indicators January/February 2017.

orange bullet Dubinsky, E. A., M. E. Conrad, R. Chakraborty, M. Bill, S. E. Borglin, J. T. Hollibaugh, O. U. Mason, Y. M. Piceno, F. C. Reid, W. T. Stringfellow, L. Tom. T. C. Hazen, and G. L. Andersen. 2013. Succession of Hydrocarbon-Degrading Bacteria in the Aftermath of the Deepwater Horizon Oil in the Gulf of Mexico. Environ. Sci. & Technol. 47:10860–10867. DOI: 10.1021/es401676y. (5.330, 97)

orange bullet Kimes, N. E., A. V. Callaghan, D. F. Aktas, J. Sunner, B. T. Golding, M. Drozdowska, T. C. Hazen, J. M. Suflita, and P. J. Morris. 2013. Metagenomic analysis and metabolite profiling of deep-sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill. Front. Microbiol. 4:50. doi: 10.3389/fmicb.2013.00050. (4.076, 107)

orange bullet Spier, C., W. T. Stringfellow, T. C. Hazen, and M. Conrad. 2013. The fate of hydrocarbons released during the 2010 MC252 oil spill in deep offshore waters. Environmental Pollution 173:224-230. (5.099, 69)

orange bullet Hazen, T. C., A. M. Rocha, and S. M. Techtmann. 2013. Advances in monitoring environmental microbes. Curr. Opinions in Biotech 24: 526-533. http://dx.doi.org/10.1016/j.copbio.2012.10.020. (9.294, 46)

orange bullet Chakraborty, R., S. E Borglin, E. L Dubinsky, G. L Andersen, and T. C. Hazen. 2012. Microbial response to the MC-252 Oil and Corexit 9500 in the Gulf of Mexico. Front. Microbiol. 3:357-357. (4.076, 43)

orange bullet Beazley, M. J., R. J. Martinez, S. Rajan, J. Powell, Y. Piceno, L. Tom, G. L. Andersen, T. C. Hazen, J. D. Van Nostrand, J. Zhou, B. Mortazavi, and P. A. Sobecky. 2012. Microbial Community Response to the Deepwater Horizon Oil Spill in a Coastal Salt Marsh. PLoS ONE 7(7): e41305. doi:10.1371/journal.pone.0041305. (3.254, 116)

orange bullet Mason, O. U., T. C. Hazen, S. Borglin, P. S. G. Chain, E. A. Dubinsky, J. L. Fortney, J. Han, H.-Y. Holman, J. Hultman, R. Lamendella, R. Mackelprang, S. Malfatti, L. M. Tom, S. G. Tringe, T. Woyke, J. Zhou, E. M. Rubin, and Janet K. Jansson. 2012. Metagenome, metatranscriptome and single-cell sequencing reveal bacterial response to the Deepwater Horizon oil spill. ISME Journal 6:1715–1727 (9.664, 280) Note: Highly cited top 1% according to Essential Science Indicators January/February 2017.

orange bullet Genome Alberta and the Public Policy Forum. 2012. Enhancing Energy Production and Environmental Outcomes through Genomics: The case for innovation. Genome Alberta and the Public Policy Forum, Canada

orange bullet Bælum, J., S. Borglin, J. L. Fortney, R. Lamendella, O. U. Mason, M. Bill, H.-Y. Holman, T. C. Hazen, and J. K. Jansson. 2012. Oil degradation potential and microbial community response to oil in the Gulf of Mexico at 1100 m. Environ. Microbiol. 14:2405-2416. (5.395, 149)

orange bullet Kinner, N. et. al. 2012. The Future of Dispersant Use in Spill Response. Workshop Report. Coastal Response Research Center, University of New Hampshire. (NA, 0)